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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
5
DNase-seq
Assay category
57
DNA binding
5
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
other context
1
other post-translational modification
Date released
57
November, 2017
3
November, 2018
2
June, 2019
Available data
679
bam
620
bigWig
463
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
62
Homo sapiens
Biosample type
57
cell line
3
tissue
2
primary cell
Organ
78
kidney
62
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
62
AMP
Genome assembly (visualization)
62
hg19
48
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
13
inconsistent control read length
target.investigated_as!
other context
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
DNase-seq
cell line
HepG2
57
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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