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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
DNase-seq
19
ChIP-seq
Assay category
49
DNA accessibility
19
DNA binding
Target of assay
17
histone
17
histone modification
10
broad histone mark
7
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
47
June, 2019
13
August, 2017
4
November, 2017
4
October, 2019
Available data
374
bam
369
bigWig
259
fastq
211
bed narrowPeak
165
tsv
123
bigBed narrowPeak
80
zippedFastqFolder
68
bed broadPeak
55
bed bed3+
55
bigBed broadPeak
22
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
3
cool
2
hdf5
1
tar
1
txt
Organism
68
Homo sapiens
Biosample type
45
tissue
23
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
68
AMP
Genome assembly (visualization)
62
hg19
53
GRCh38
Lab
68
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
68 results
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DNase-seq
ChIP-seq
tissue
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
13
forelimb muscle
1
hindlimb muscle
1
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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