Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
DNase-seq
17
ChIP-seq
Assay category
41
DNA accessibility
17
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
35
June, 2019
12
November, 2017
6
October, 2019
3
October, 2017
2
November, 2018
Available data
420
bam
368
bigWig
330
bed narrowPeak
204
bigBed narrowPeak
124
tagAlign
94
tsv
58
bed broadPeak
49
bigBed broadPeak
45
bed bed3+
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
58
Homo sapiens
Biosample type
41
tissue
17
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
58
AMP
Genome assembly (visualization)
55
GRCh38
47
hg19
Lab
58
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
brain
14
3
caudate nucleus
1
1
cingulate gyrus
2
coronary artery
2
frontal cortex
2
+ See 14 more…
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
astrocyte of the hippocampus
1
+ See 3 more…
See all biosamples
Download