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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
1
DNase-seq
Assay category
54
DNA binding
1
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
54
November, 2017
1
October, 2019
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
55
Homo sapiens
Biosample type
213
tissue
55
cell line
44
primary cell
1
in vitro differentiated cells
Organ
54
liver
1
pancreas
Project
55
AMP
Genome assembly (visualization)
55
hg19
42
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
11
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
DNase-seq
cell line
HepG2
54
Panc1
1
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