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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
105
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
268
DNA accessibility
105
DNA binding
52
Transcription
41
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
63
November, 2017
39
August, 2017
19
September, 2020
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3289
bam
3028
bigWig
1677
bed narrowPeak
1600
tsv
1269
fastq
949
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
460
Homo sapiens
Biosample type
213
tissue
197
primary cell
55
cell line
1
in vitro differentiated cells
Organ
101
pancreas
100
epithelium
78
kidney
59
liver
46
musculature of body
44
brain
36
limb
30
heart
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
313
AMP
153
HPAP
Genome assembly (visualization)
289
hg19
275
GRCh38
Lab
311
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
466 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
+ See 22 more…
cell line
HepG2
54
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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