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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
18
ChIP-seq
2
ATAC-seq
Assay category
208
DNA accessibility
18
DNA binding
Target of assay
42
histone
42
histone modification
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
November, 2017
19
August, 2017
9
November, 2018
7
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2668
bam
2433
bigWig
1600
tsv
1109
bed narrowPeak
924
fastq
533
bigBed narrowPeak
261
bed bed3+
226
bed broadPeak
214
tagAlign
213
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
224
Homo sapiens
Biosample type
189
tissue
35
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
38
musculature of body
36
limb
33
brain
30
heart
18
ureter
16
epithelium
13
pancreas
11
vasculature
10
connective tissue
9
blood vessel
5
liver
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
226
AMP
Genome assembly (visualization)
215
GRCh38
202
hg19
Lab
224
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
month_released!
November, 2017
BIOSAMPLE
ASSAY
226 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
7
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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