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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
109
ChIP-seq
2
ATAC-seq
Assay category
207
DNA accessibility
109
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
66
November, 2017
39
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3068
bam
2877
bigWig
1652
bed narrowPeak
1469
tsv
1184
fastq
992
bigBed narrowPeak
358
tagAlign
316
bed broadPeak
279
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
310
Homo sapiens
Biosample type
213
tissue
55
cell line
48
primary cell
in vitro differentiated cells
Organ
78
kidney
59
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
316
AMP
Genome assembly (visualization)
292
hg19
276
GRCh38
Lab
314
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
chromatin remodeller
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
316 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
54
Panc1
1
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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