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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
30
DNase-seq
Assay category
65
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
55
November, 2017
24
June, 2019
10
August, 2017
5
October, 2019
1
November, 2020
Available data
1323
bam
1225
bigWig
899
fastq
670
bed narrowPeak
524
tsv
440
bigBed narrowPeak
153
zippedFastqFolder
96
tagAlign
95
bed broadPeak
95
bigBed broadPeak
61
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
95
Homo sapiens
Biosample type
tissue
53
cell line
41
primary cell
1
in vitro differentiated cells
Organ
54
liver
20
epithelium
10
kidney
10
vasculature
8
brain
7
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
95
AMP
Genome assembly (visualization)
88
hg19
78
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
DNase-seq
cell line
HepG2
52
Panc1
1
primary cell
skeletal muscle myoblast
8
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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in vitro differentiated cells
adipocyte
1
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