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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
1
DNase-seq
Assay category
52
DNA binding
1
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
52
November, 2017
1
October, 2019
Available data
565
bam
503
bigWig
419
fastq
386
bed narrowPeak
345
bigBed narrowPeak
119
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
53
Homo sapiens
Biosample type
198
tissue
53
cell line
41
primary cell
1
in vitro differentiated cells
Organ
52
liver
1
pancreas
Project
53
AMP
Genome assembly (visualization)
53
hg19
40
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
8
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
DNase-seq
cell line
HepG2
52
Panc1
1
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