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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
Assay category
32
DNA accessibility
7
DNA binding
Target of assay
12
histone
12
histone modification
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
5
November, 2017
2
November, 2018
2
October, 2017
Available data
138
bam
116
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
39
Homo sapiens
Biosample type
31
tissue
8
primary cell
Organ
78
kidney
57
liver
41
musculature of body
39
brain
36
limb
30
heart
20
epithelium
18
ureter
17
pancreas
15
vasculature
12
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
39
AMP
Genome assembly (visualization)
39
GRCh38
29
hg19
Lab
39
AMP-T2D consortium
Audit category:
1
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
39 results
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DNase-seq
ChIP-seq
tissue
brain
14
2
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
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primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
brain pericyte
1
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