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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
21
ATAC-seq
DNase-seq
Assay category
110
DNA binding
21
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
42
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
290
bam
258
bigWig
140
fastq
131
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
131
Homo sapiens
Biosample type
807
tissue
402
cell line
266
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
44
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
131
AMP
Genome assembly (visualization)
130
hg19
127
GRCh38
Lab
127
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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