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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
5
DNase-seq
3
ATAC-seq
Assay category
359
DNA binding
8
DNA accessibility
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
217
November, 2017
51
November, 2018
50
December, 2017
19
May, 2020
18
August, 2017
6
October, 2019
3
August, 2021
2
June, 2019
1
February, 2021
Available data
531
bam
528
bigWig
367
bed narrowPeak
343
fastq
326
bigBed narrowPeak
162
tsv
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
367
Homo sapiens
Biosample type
262
cell line
85
tissue
14
in vitro differentiated cells
6
primary cell
Organ
367
liver
201
brain
188
pancreas
182
kidney
150
heart
138
epithelium
132
vasculature
128
blood vessel
91
limb
74
artery
71
connective tissue
54
blood
54
bodily fluid
46
musculature of body
27
nerve
18
ureter
14
embryo
14
spleen
12
vein
11
adipose tissue
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
367
AMP
Genome assembly (visualization)
437
hg19
367
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
367 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
261
1
tissue
liver
74
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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