Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
131
DNA binding
10
DNA accessibility
Target of assay
107
histone modification
106
histone
56
broad histone mark
49
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
309
November, 2017
210
June, 2019
189
October, 2019
141
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
72
December, 2017
69
November, 2018
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
286
fastq
281
bam
271
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
135
Homo sapiens
Biosample type
66
tissue
43
in vitro differentiated cells
32
primary cell
Organ
49
pancreas
46
connective tissue
18
liver
17
epithelium
13
musculature of body
3
adipose tissue
Project
141
AMP
Genome assembly (visualization)
141
hg19
117
GRCh38
Lab
141
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
141 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
Download