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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
131
DNA binding
89
Transcription
10
DNA accessibility
Target of assay
107
histone modification
106
histone
56
broad histone mark
49
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
582
February, 2021
309
November, 2017
306
May, 2021
230
August, 2017
229
August, 2021
216
May, 2020
210
June, 2019
205
October, 2019
164
July, 2018
97
May, 2019
81
February, 2023
72
December, 2017
72
July, 2019
72
September, 2018
69
November, 2018
65
April, 2019
57
November, 2019
49
April, 2018
48
March, 2020
47
October, 2018
40
May, 2024
38
May, 2022
31
February, 2018
30
December, 2018
26
January, 2019
25
February, 2020
12
October, 2017
9
December, 2019
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
Available data
286
fastq
281
bam
271
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
224
Homo sapiens
Biosample type
155
tissue
43
in vitro differentiated cells
32
primary cell
Organ
138
pancreas
46
connective tissue
18
liver
17
epithelium
13
musculature of body
3
adipose tissue
Project
230
AMP
Genome assembly (visualization)
230
hg19
206
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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