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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
5
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
90
DNA binding
9
DNA accessibility
Target of assay
83
histone modification
82
histone
44
broad histone mark
38
narrow histone mark
7
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
313
November, 2017
210
June, 2019
187
October, 2019
128
May, 2021
99
August, 2017
97
May, 2019
81
August, 2021
73
November, 2018
65
April, 2019
63
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
December, 2017
38
May, 2022
32
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
bed bedMethyl
6
bigBed bedMethyl
Organism
93
Homo sapiens
Biosample type
66
tissue
in vitro differentiated cells
33
primary cell
Organ
49
pancreas
18
liver
17
epithelium
13
musculature of body
3
adipose tissue
3
connective tissue
Project
99
AMP
Genome assembly (visualization)
99
hg19
75
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 3 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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