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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
36
ATAC-seq
17
DNase-seq
1
FAIRE-seq
Assay category
79
DNA binding
54
DNA accessibility
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
6
RNA binding protein
6
transcription factor
Date released
35
September, 2018
21
October, 2019
18
June, 2019
17
August, 2017
12
February, 2023
12
November, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2021
1
March, 2020
1
May, 2021
Available data
293
bam
281
bigWig
238
fastq
154
tsv
133
bed narrowPeak
80
zippedFastqFolder
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
133
Homo sapiens
Biosample type
106
primary cell
in vitro differentiated cells
15
cell line
12
tissue
Organ
427
liver
212
pancreas
203
brain
183
kidney
151
heart
133
epithelium
133
vasculature
129
blood vessel
92
limb
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
30
connective tissue
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
131
AMP
2
T1D
Genome assembly (visualization)
127
hg19
120
GRCh38
Lab
133
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
+ See 13 more…
cell line
EndoC_BH1
13
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
See all biosamples
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