Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
399
DNA binding
28
DNA accessibility
Target of assay
327
transcription factor
81
recombinant protein
69
histone modification
68
histone
54
RNA binding protein
46
narrow histone mark
22
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
36
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
666
bam
608
bigWig
450
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
427
Homo sapiens
Biosample type
308
cell line
113
tissue
in vitro differentiated cells
6
primary cell
Organ
427
liver
212
pancreas
203
brain
183
kidney
151
heart
133
epithelium
133
vasculature
129
blood vessel
92
limb
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
30
connective tissue
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
427
AMP
Genome assembly (visualization)
423
hg19
353
GRCh38
Lab
393
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
427 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download