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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
13
ATAC-seq
1
DNase-seq
Assay category
31
DNA binding
14
DNA accessibility
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
4
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
16
December, 2017
12
February, 2023
12
November, 2019
3
May, 2021
1
March, 2020
1
October, 2019
Available data
75
bam
70
bigWig
45
bed narrowPeak
40
tsv
19
fastq
15
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
45
Homo sapiens
Biosample type
primary cell
18
in vitro differentiated cells
15
cell line
12
tissue
Organ
435
liver
192
brain
161
kidney
146
pancreas
145
heart
112
blood vessel
112
vasculature
92
limb
74
artery
58
connective tissue
54
blood
54
bodily fluid
51
musculature of body
45
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
43
AMP
2
T1D
Genome assembly (visualization)
45
hg19
33
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
13
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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