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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
104
total RNA-seq
13
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
411
DNA binding
104
Transcription
15
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
13
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
532
Homo sapiens
Biosample type
1906
tissue
629
primary cell
532
cell line
276
in vitro differentiated cells
3
stem cell
Organ
333
liver
64
artery
64
blood vessel
64
heart
64
vasculature
57
pancreas
55
blood
55
bodily fluid
51
epithelium
12
kidney
8
embryo
Project
528
AMP
4
T1D
Genome assembly (visualization)
527
hg19
464
GRCh38
Lab
518
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
59
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
532 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
H1-hESC
8
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