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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ChIP-seq
9
ATAC-seq
1
DNase-seq
Assay category
379
DNA binding
10
DNA accessibility
Target of assay
351
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
23
histone
23
histone modification
12
narrow histone mark
11
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
14
October, 2019
Available data
531
bam
472
bigWig
427
fastq
389
bed narrowPeak
354
bigBed narrowPeak
84
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
389
Homo sapiens
Biosample type
932
tissue
389
cell line
189
primary cell
114
in vitro differentiated cells
2
stem cell
Organ
308
liver
54
blood
54
bodily fluid
21
pancreas
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
389
AMP
Genome assembly (visualization)
385
hg19
343
GRCh38
Lab
375
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
389 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
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