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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
375
DNA binding
12
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
broad histone mark
2
other context
2
other post-translational modification
Date released
242
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
February, 2021
13
August, 2021
12
October, 2019
6
November, 2019
1
March, 2020
1
May, 2021
Available data
564
bam
504
bigWig
419
fastq
387
bed narrowPeak
345
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
387
Homo sapiens
Biosample type
711
tissue
387
cell line
183
primary cell
95
in vitro differentiated cells
1
stem cell
Organ
300
liver
54
blood
54
bodily fluid
12
artery
12
blood vessel
12
heart
12
pancreas
12
vasculature
9
epithelium
8
kidney
Project
385
AMP
2
T1D
Genome assembly (visualization)
383
hg19
342
GRCh38
Lab
374
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
387 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
GM12878
54
smooth muscle cell of the coronary artery
4
8
EndoC_BH1
7
1
Panc1
3
1
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