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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
336
DNA binding
12
DNA accessibility
Target of assay
296
transcription factor
73
recombinant protein
42
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
521
bam
465
bigWig
366
fastq
348
bed narrowPeak
299
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
348
Homo sapiens
Biosample type
927
tissue
348
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
264
liver
42
blood
42
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
346
AMP
2
T1D
Genome assembly (visualization)
346
hg19
302
GRCh38
Lab
334
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
19
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
348 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
263
1
GM12878
42
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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