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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
374
DNA binding
12
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
243
November, 2017
56
November, 2018
27
December, 2018
14
February, 2021
14
January, 2019
12
August, 2021
12
October, 2019
8
November, 2019
Available data
565
bam
503
bigWig
419
fastq
386
bed narrowPeak
345
bigBed narrowPeak
119
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
386
Homo sapiens
Biosample type
693
tissue
386
cell line
191
primary cell
92
in vitro differentiated cells
1
stem cell
Organ
300
liver
53
blood
53
bodily fluid
12
artery
12
blood vessel
12
heart
12
pancreas
12
vasculature
9
epithelium
8
kidney
Project
386
AMP
Genome assembly (visualization)
382
hg19
342
GRCh38
Lab
374
AMP-T2D consortium
12
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
386 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
GM12878
53
smooth muscle cell of the coronary artery
4
8
EndoC_BH1
7
1
Panc1
3
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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