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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
25
ATAC-seq
2
Capture-C
1
DNase-seq
Assay category
115
DNA binding
26
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
44
August, 2017
38
December, 2017
27
August, 2021
16
February, 2018
6
February, 2023
5
May, 2021
5
November, 2019
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
143
Homo sapiens
Biosample type
961
tissue
406
cell line
302
primary cell
143
in vitro differentiated cells
3
stem cell
Organ
52
connective tissue
18
epithelium
15
embryo
14
liver
2
pancreas
Project
143
AMP
Genome assembly (visualization)
142
hg19
133
GRCh38
Lab
137
AMP-T2D consortium
6
Struan F.A. Grant, CHOP
Audit category:
15
inconsistent ontology term
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
ATAC-seq
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
43
2
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
13
definitive endodermal cell
7
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