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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
110
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
23
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
October, 2019
Available data
291
bam
254
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
128
Homo sapiens
Biosample type
944
tissue
404
cell line
295
primary cell
128
in vitro differentiated cells
2
stem cell
Organ
43
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
128
AMP
Genome assembly (visualization)
128
GRCh38
127
hg19
Lab
128
AMP-T2D consortium
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
Audit category:
17
inconsistent control read length
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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