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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
Assay category
226
DNA binding
69
DNA accessibility
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
32
September, 2018
28
August, 2017
23
June, 2019
16
October, 2019
6
November, 2017
4
May, 2019
3
August, 2021
Available data
247
bigWig
242
bam
226
bed narrowPeak
100
tagAlign
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
226
Homo sapiens
Biosample type
555
tissue
392
cell line
226
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
66
epithelium
46
pancreas
14
vasculature
12
blood vessel
12
kidney
10
vein
9
connective tissue
8
musculature of body
6
brain
3
heart
3
liver
2
eye
Project
142
AMP
84
T1D
Genome assembly (visualization)
226
hg19
195
GRCh38
Lab
114
Kyle Gaulton, UCSD
112
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
226 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
14
pancreatic ductal cell
13
pancreatic endocrine cell
11
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