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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
ChIP-seq
49
ATAC-seq
31
DNase-seq
1
FAIRE-seq
Assay category
618
DNA binding
81
DNA accessibility
Target of assay
362
transcription factor
251
histone
251
histone modification
129
broad histone mark
122
narrow histone mark
88
recombinant protein
73
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
128
May, 2021
56
November, 2018
47
June, 2019
46
September, 2018
36
October, 2019
33
August, 2017
27
December, 2018
17
August, 2021
15
February, 2021
15
January, 2019
12
November, 2019
5
September, 2017
4
May, 2019
2
November, 2020
1
March, 2020
Available data
1191
bam
1135
bigWig
836
fastq
699
bed narrowPeak
464
bigBed narrowPeak
389
tsv
153
zippedFastqFolder
120
tagAlign
108
bed broadPeak
108
bigBed broadPeak
40
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
699
Homo sapiens
Biosample type
944
tissue
404
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
314
liver
121
epithelium
89
pancreas
54
blood
54
bodily fluid
33
vasculature
30
kidney
29
blood vessel
18
heart
17
connective tissue
13
vein
12
artery
11
brain
9
musculature of body
3
eye
Project
613
AMP
86
T1D
Genome assembly (visualization)
688
hg19
619
GRCh38
Lab
571
AMP-T2D consortium
114
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
46
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
44
missing controlled_by
Audit category:
29
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
BIOSAMPLE
ASSAY
699 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
307
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
+ See 5 more…
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 29 more…
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