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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
947
ChIP-seq
218
ATAC-seq
179
DNase-seq
4
FAIRE-seq
Assay category
947
DNA binding
401
DNA accessibility
Target of assay
520
histone modification
519
histone
422
transcription factor
269
narrow histone mark
250
broad histone mark
88
recombinant protein
84
RNA binding protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
307
November, 2017
166
October, 2019
163
June, 2019
93
May, 2019
78
August, 2021
73
November, 2018
66
August, 2017
65
April, 2019
63
February, 2023
45
October, 2018
38
May, 2022
36
December, 2017
32
November, 2019
30
December, 2018
27
May, 2020
22
February, 2021
21
January, 2019
12
October, 2017
7
July, 2019
3
March, 2020
1
May, 2021
Available data
2489
bam
2254
bigWig
1348
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1342
Homo sapiens
Biosample type
944
tissue
404
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
421
liver
192
brain
161
kidney
145
heart
144
pancreas
112
blood vessel
112
vasculature
92
limb
74
artery
54
blood
54
bodily fluid
51
musculature of body
30
eye
27
epithelium
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1344
AMP
4
T1D
Genome assembly (visualization)
1201
GRCh38
1177
hg19
Lab
1232
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
Audit category:
28
inconsistent control
25
inconsistent ontology term
1
inconsistent replicate
Audit category:
16
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
1348 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
+ See 131 more…
cell line
HepG2
307
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
+ See 5 more…
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