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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
ChIP-seq
208
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
519
DNA binding
389
DNA accessibility
Target of assay
480
histone modification
479
histone
249
narrow histone mark
230
broad histone mark
39
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
Date released
163
June, 2019
151
October, 2019
93
May, 2019
66
August, 2017
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
45
October, 2018
38
May, 2022
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1859
bam
1696
bigWig
1076
tsv
908
bed narrowPeak
525
bigBed narrowPeak
329
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
902
Homo sapiens
Biosample type
908
tissue
404
cell line
295
primary cell
98
in vitro differentiated cells
Organ
192
brain
153
kidney
133
heart
123
pancreas
100
blood vessel
100
vasculature
92
limb
77
liver
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
906
AMP
2
T1D
Genome assembly (visualization)
807
GRCh38
741
hg19
Lab
806
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
BIOSAMPLE
ASSAY
908 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
20
64
13
1
liver
53
20
2
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
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