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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ATAC-seq
66
ChIP-seq
Assay category
150
DNA accessibility
66
DNA binding
Target of assay
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
64
February, 2023
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2937
bigWig
1714
bed narrowPeak
1450
tsv
1347
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
216
Homo sapiens
Biosample type
169
tissue
30
primary cell
14
cell line
3
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
216
AMP
Genome assembly (visualization)
117
hg19
99
GRCh38
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
216 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
osteoblast
1
See all biosamples
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