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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
45
ChIP-seq
Assay category
151
DNA accessibility
45
DNA binding
Target of assay
34
histone
34
histone modification
21
broad histone mark
13
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
65
February, 2023
30
May, 2021
20
May, 2022
1
April, 2019
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
196
Homo sapiens
Biosample type
148
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
12
epithelium
3
connective tissue
1
adipose tissue
Project
196
AMP
Genome assembly (visualization)
99
GRCh38
97
hg19
Lab
64
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
bed broadPeak
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
+ See 2 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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