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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ATAC-seq
52
ChIP-seq
Assay category
131
DNA accessibility
52
DNA binding
Target of assay
52
histone
52
histone modification
32
broad histone mark
20
narrow histone mark
Date released
66
August, 2021
65
February, 2023
30
May, 2021
20
August, 2017
1
April, 2019
1
November, 2017
Available data
bam
2507
bigWig
1426
tsv
1336
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
183
Homo sapiens
Biosample type
149
tissue
30
primary cell
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
183
AMP
Genome assembly (visualization)
99
GRCh38
84
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
organ_slims!
liver
BIOSAMPLE
ASSAY
183 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 5 more…
primary cell
CD8-positive, alpha-beta T cell
30
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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