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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
11
ChIP-seq
Assay category
151
DNA accessibility
11
DNA binding
Target of assay
55
histone
histone modification
33
broad histone mark
22
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
77
August, 2021
65
February, 2023
20
May, 2022
Available data
bam
2295
bigWig
1600
tsv
1128
fastq
961
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
248
bed bed3+
161
txt
153
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
162
Homo sapiens
Biosample type
147
tissue
11
cell line
4
in vitro differentiated cells
Organ
64
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
31
liver
27
eye
12
epithelium
3
connective tissue
1
adipose tissue
Project
162
AMP
Genome assembly (visualization)
99
GRCh38
63
hg19
Lab
64
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
11
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
+ See 1 more…
cell line
HepG2
11
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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