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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
23
ATAC-seq
Assay category
353
DNA binding
23
DNA accessibility
Target of assay
281
transcription factor
81
recombinant protein
69
histone modification
68
histone
49
RNA binding protein
46
narrow histone mark
22
broad histone mark
11
chromatin remodeller
1
other context
1
other post-translational modification
Date released
193
November, 2017
50
December, 2017
44
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
1
February, 2021
Available data
673
bam
614
bigWig
457
fastq
433
bed narrowPeak
350
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
376
Homo sapiens
Biosample type
248
cell line
110
tissue
14
in vitro differentiated cells
4
primary cell
Organ
376
liver
195
pancreas
161
heart
156
brain
131
epithelium
118
blood vessel
118
vasculature
105
kidney
70
artery
65
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
embryo
14
musculature of body
13
spleen
11
vein
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
376
AMP
Genome assembly (visualization)
372
hg19
312
GRCh38
Lab
342
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
inconsistent control run_type
files.file_type!
bed broadPeak
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
ATAC-seq
cell line
HepG2
247
1
tissue
liver
82
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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