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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
7
ATAC-seq
Assay category
43
DNA binding
7
DNA accessibility
Target of assay
26
histone
26
histone modification
17
transcription factor
13
narrow histone mark
12
broad histone mark
4
RNA binding protein
2
chromatin remodeller
Date released
43
August, 2017
2
August, 2021
1
February, 2021
1
February, 2023
1
November, 2019
1
November, 2020
1
October, 2017
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
50
Homo sapiens
Biosample type
44
in vitro differentiated cells
4
tissue
2
primary cell
Organ
123
pancreas
83
liver
79
kidney
76
brain
75
epithelium
57
heart
50
blood vessel
50
connective tissue
50
vasculature
49
artery
27
eye
14
embryo
13
musculature of body
8
bone element
8
limb
8
skeleton
4
adipose tissue
1
nerve
1
pituitary gland
1
spleen
Project
50
AMP
Genome assembly (visualization)
50
hg19
46
GRCh38
Lab
48
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
Audit category:
6
inconsistent control read length
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
50 results
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Clear Filters
ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
osteoblast
1
tissue
adipose tissue
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous abdominal adipose tissue
1
primary cell
osteoblast
2
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