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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
374
DNA binding
28
DNA accessibility
Target of assay
329
transcription factor
81
recombinant protein
56
RNA binding protein
42
histone modification
41
histone
23
broad histone mark
23
chromatin remodeller
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
51
November, 2018
50
December, 2017
20
May, 2022
18
August, 2017
14
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
402
Homo sapiens
Biosample type
299
cell line
86
tissue
14
in vitro differentiated cells
3
primary cell
Organ
402
liver
200
pancreas
187
heart
183
kidney
146
epithelium
129
vasculature
125
blood vessel
120
brain
92
limb
74
connective tissue
70
artery
54
blood
54
bodily fluid
47
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
Project
402
AMP
Genome assembly (visualization)
398
hg19
336
GRCh38
Lab
368
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
bedpe
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
298
1
tissue
liver
55
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
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