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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
378
DNA binding
12
DNA accessibility
Target of assay
347
transcription factor
88
recombinant protein
63
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
12
November, 2019
9
February, 2021
1
March, 2020
1
May, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
390
Homo sapiens
Biosample type
839
tissue
390
cell line
197
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
299
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
8
artery
8
blood vessel
8
heart
8
kidney
8
vasculature
Project
388
AMP
2
T1D
Genome assembly (visualization)
386
hg19
344
GRCh38
Lab
376
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
298
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
8
Panc1
6
1
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