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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
818
total RNA-seq
689
ChIP-seq
209
ATAC-seq
176
DNase-seq
16
small RNA-seq
15
WGBS
3
FAIRE-seq
Assay category
834
Transcription
689
DNA binding
388
DNA accessibility
15
DNA methylation
Target of assay
463
histone
463
histone modification
242
narrow histone mark
221
broad histone mark
155
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
August, 2017
186
October, 2019
163
June, 2019
116
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2017
64
August, 2021
64
July, 2019
63
February, 2023
48
December, 2017
44
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
26
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1737
bam
1594
bigWig
987
tsv
918
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1926
Homo sapiens
Biosample type
1926
tissue
596
cell line
581
primary cell
241
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
302
pancreas
282
liver
227
brain
208
heart
162
kidney
122
blood vessel
122
vasculature
114
limb
69
artery
66
bone element
44
musculature of body
42
nerve
30
eye
24
spleen
18
ureter
12
epithelium
8
skeleton
1
pituitary gland
Project
1924
AMP
2
T1D
Genome assembly (visualization)
1684
GRCh38
1541
hg19
Lab
1777
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
1926 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
liver
147
97
20
2
1
islet of Langerhans
183
8
38
kidney
27
64
13
1
bone tissue
58
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