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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ATAC-seq
209
DNase-seq
5
FAIRE-seq
Assay category
1285
DNA binding
492
DNA accessibility
5
3D chromatin structure
Date released
187
June, 2019
76
August, 2021
65
February, 2023
38
May, 2022
26
November, 2019
18
February, 2021
15
October, 2019
14
September, 2018
13
May, 2021
10
August, 2017
10
November, 2018
7
July, 2019
6
October, 2017
5
September, 2017
2
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
0
hdf5
Organism
492
Homo sapiens
Biosample type
389
tissue
69
primary cell
22
in vitro differentiated cells
12
cell line
Organ
144
kidney
77
heart
74
pancreas
58
vasculature
56
blood vessel
54
epithelium
49
artery
44
limb
33
brain
33
musculature of body
31
eye
28
liver
18
ureter
17
connective tissue
8
bone element
8
skeleton
6
adipose tissue
3
nerve
3
vein
2
spleen
Project
492
AMP
Genome assembly (visualization)
415
GRCh38
370
hg19
Lab
386
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
492 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
64
13
1
islet of Langerhans
37
1
1
coronary artery
36
2
liver
20
2
heart
18
+ See 53 more…
primary cell
monocyte
13
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 25 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
1
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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