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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
132
DNA binding
22
DNA accessibility
Target of assay
90
histone
90
histone modification
45
broad histone mark
44
narrow histone mark
32
transcription factor
10
control
6
RNA binding protein
3
chromatin remodeller
Date released
57
August, 2017
34
December, 2017
32
August, 2021
16
February, 2018
6
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
154
Homo sapiens
Biosample type
1037
tissue
410
cell line
297
primary cell
154
in vitro differentiated cells
2
stem cell
Organ
59
connective tissue
19
epithelium
14
embryo
14
liver
3
pancreas
Project
154
AMP
Genome assembly (visualization)
131
hg19
128
GRCh38
Lab
150
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
56
1
1
neural progenitor cell
20
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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