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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
106
ATAC-seq
Assay category
128
DNA binding
106
DNA accessibility
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
114
May, 2021
80
August, 2021
38
May, 2022
2
February, 2023
Available data
270
bigWig
234
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
234
Homo sapiens
Biosample type
114
primary cell
102
tissue
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
34
liver
18
pancreas
2
connective tissue
Project
150
AMP
84
T1D
Genome assembly (visualization)
170
hg19
148
GRCh38
Lab
AMP-T2D consortium
132
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
September, 2018
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
ATAC-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
tissue
kidney
64
liver
20
islet of Langerhans
18
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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