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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
19
ATAC-seq
Assay category
68
DNA binding
19
DNA accessibility
Target of assay
53
histone
53
histone modification
28
narrow histone mark
25
broad histone mark
15
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
34
December, 2017
23
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
232
bam
202
bigWig
126
tsv
87
bed narrowPeak
86
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
87
Homo sapiens
Biosample type
920
tissue
404
cell line
269
primary cell
87
in vitro differentiated cells
2
stem cell
Organ
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
87
AMP
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
85
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
11
inconsistent control read length
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
primitive gut cell
6
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