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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
92
ChIP-seq
Assay category
151
DNA accessibility
92
DNA binding
Target of assay
87
histone
87
histone modification
52
broad histone mark
35
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
66
August, 2021
65
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2631
bigWig
1480
tsv
1399
bed narrowPeak
907
fastq
674
bigBed narrowPeak
378
tagAlign
269
bed bed3+
262
bed broadPeak
225
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
243
Homo sapiens
Biosample type
209
tissue
30
primary cell
cell line
4
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
27
eye
20
liver
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
243
AMP
Genome assembly (visualization)
139
GRCh38
104
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
spleen
files.file_type!
bam
biosample_type!
cell line
BIOSAMPLE
ASSAY
243 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 7 more…
primary cell
CD8-positive, alpha-beta T cell
30
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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