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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
69
ChIP-seq
Assay category
151
DNA accessibility
69
DNA binding
Target of assay
90
histone
90
histone modification
53
broad histone mark
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
78
August, 2021
65
February, 2023
25
May, 2024
20
May, 2021
20
May, 2022
12
August, 2017
Available data
bam
2715
bigWig
1599
tsv
1376
bed narrowPeak
1226
fastq
882
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
259
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
220
Homo sapiens
Biosample type
184
tissue
20
primary cell
12
cell line
4
in vitro differentiated cells
Organ
64
kidney
60
heart
35
artery
35
blood vessel
35
vasculature
32
liver
27
eye
12
epithelium
8
musculature of body
4
pancreas
3
connective tissue
1
adipose tissue
Project
220
AMP
Genome assembly (visualization)
124
GRCh38
96
hg19
Lab
75
AMP-T2D consortium
64
Katalin Susztak, Upenn
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
20
Kyle Gaulton, UCSD
12
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
spleen
files.file_type!
bam
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
220 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
left cardiac atrium
25
liver
20
retina
15
+ See 4 more…
primary cell
CD8-positive, alpha-beta T cell
20
cell line
HepG2
12
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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