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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
132
DNA binding
10
DNA accessibility
Target of assay
108
histone modification
107
histone
56
broad histone mark
50
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
72
December, 2017
69
November, 2018
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
27
December, 2018
27
May, 2020
23
February, 2021
16
February, 2018
January, 2019
11
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
136
Homo sapiens
Biosample type
66
tissue
43
in vitro differentiated cells
33
primary cell
Organ
49
pancreas
46
connective tissue
18
liver
17
epithelium
13
musculature of body
3
adipose tissue
Project
142
AMP
Genome assembly (visualization)
142
hg19
118
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
spleen
month_released!
January, 2019
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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