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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
56
DNA binding
33
DNA accessibility
Target of assay
histone
168
histone modification
107
narrow histone mark
61
broad histone mark
54
transcription factor
13
RNA binding protein
10
chromatin remodeller
Date released
30
June, 2019
27
December, 2018
14
January, 2019
14
November, 2018
3
November, 2017
1
July, 2019
Available data
136
bam
110
bigWig
89
bed narrowPeak
89
bigBed narrowPeak
70
fastq
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
89
Homo sapiens
Biosample type
53
cell line
28
tissue
8
primary cell
Organ
361
liver
153
kidney
94
heart
87
pancreas
67
vasculature
64
blood vessel
63
epithelium
54
artery
53
blood
53
bodily fluid
44
limb
40
connective tissue
36
brain
33
musculature of body
32
eye
18
ureter
11
adipose tissue
8
bone element
8
skeleton
8
spleen
3
embryo
3
nerve
3
vein
Project
89
AMP
Genome assembly (visualization)
88
GRCh38
79
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent control
target.investigated_as!
histone
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
GM12878
53
tissue
brain
14
frontal cortex
2
1
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 8 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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