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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
16
ATAC-seq
8
DNase-seq
Assay category
58
DNA binding
24
DNA accessibility
Target of assay
35
histone
35
histone modification
23
transcription factor
18
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
14
June, 2019
9
February, 2021
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
600
bam
568
bigWig
478
tsv
101
fastq
88
txt
82
bed narrowPeak
27
bigBed narrowPeak
25
bed bed3+
22
tagAlign
10
bed bed3
9
bed broadPeak
8
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
82
Homo sapiens
Biosample type
45
in vitro differentiated cells
21
tissue
16
primary cell
Organ
441
liver
214
pancreas
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
82
AMP
Genome assembly (visualization)
81
hg19
78
GRCh38
Lab
80
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
6
inconsistent control read length
organ_slims!
brain
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
osteoblast
1
tissue
omental fat pad
3
1
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
distal epiphysis
1
+ See 8 more…
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
osteoblast
2
1
hepatic stellate cell
1
See all biosamples
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