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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
33
DNase-seq
1
ATAC-seq
1
FAIRE-seq
Assay category
182
DNA binding
35
DNA accessibility
Target of assay
173
histone
173
histone modification
108
narrow histone mark
65
broad histone mark
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
75
October, 2019
64
November, 2017
30
June, 2019
25
May, 2019
7
October, 2017
6
January, 2019
6
November, 2018
3
December, 2018
1
July, 2019
Available data
267
bam
238
bigWig
217
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
48
bed broadPeak
45
fastq
39
bigBed broadPeak
36
bed bed3+
27
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
217
Homo sapiens
Biosample type
206
tissue
11
primary cell
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
217
AMP
Genome assembly (visualization)
215
GRCh38
155
hg19
Lab
217
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
217 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
spleen
12
1
1
caudate nucleus
12
1
+ See 69 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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