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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
32
DNase-seq
1
FAIRE-seq
Assay category
167
DNA binding
33
DNA accessibility
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
3
RNA binding protein
transcription factor
Date released
75
October, 2019
61
November, 2017
30
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
240
bam
219
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
18
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
200
Homo sapiens
Biosample type
192
tissue
8
primary cell
Organ
201
pancreas
200
brain
174
kidney
142
epithelium
139
heart
124
vasculature
121
blood vessel
112
liver
92
limb
69
artery
60
musculature of body
52
connective tissue
32
eye
27
nerve
18
ureter
13
vein
11
embryo
8
adipose tissue
8
bone element
8
skeleton
8
spleen
3
blood
3
bodily fluid
1
pituitary gland
Project
200
AMP
Genome assembly (visualization)
198
GRCh38
138
hg19
Lab
200
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
200 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
11
14
layer of hippocampus
17
angular gyrus
14
caudate nucleus
12
1
temporal lobe
13
+ See 68 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
brain pericyte
1
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