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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
388
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
388
DNA binding
28
DNA accessibility
Target of assay
314
transcription factor
80
recombinant protein
71
histone modification
70
histone
50
RNA binding protein
46
narrow histone mark
24
broad histone mark
12
chromatin remodeller
2
other context
2
other post-translational modification
Date released
230
November, 2017
50
December, 2017
46
November, 2018
27
May, 2020
20
May, 2022
17
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
654
bam
595
bigWig
438
fastq
416
bed narrowPeak
333
bigBed narrowPeak
174
tsv
75
tagAlign
50
bed broadPeak
50
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
416
Homo sapiens
Biosample type
284
cell line
112
tissue
14
in vitro differentiated cells
6
primary cell
Organ
416
liver
205
pancreas
203
brain
183
kidney
151
heart
146
epithelium
133
vasculature
129
blood vessel
92
limb
74
artery
69
connective tissue
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
vein
11
embryo
8
bone element
8
skeleton
1
pituitary gland
Project
416
AMP
Genome assembly (visualization)
412
hg19
344
GRCh38
Lab
382
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
416 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
283
1
tissue
liver
81
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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